CS 481 Bioinformatics Algorithms

Biomolecular sequence analysis, Needleman/Wunsch and Smith/Waterman alignment algorithms. Pattern matching algorithms and sequence similarity search. Phylogenetic trees, distance based hierarchical clustering and protein and genome sequence database search. RNA secondary structure prediction problem. Exact and approximation algorithms, heuristics, stochastic context-free grammars, hidden Markov models. Credit units: 3 ECTS Credit units: 5.

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