CS 481 Bioinformatics Algorithms
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Algorithms for sequence analysis, Needleman/Wunsch and Smith/Waterman alignment algorithms. Multiple sequence alignment. Pattern matching algorithms and sequence similarity search. Sequence database search. K-mer indexes, probabilistic data structures such as Bloom filters. Alignment-free k-mer composition analysis, applications in metagenomics. Graphs in genome analytics. Practical issues in genomics.
Credit units: 3 ECTS Credit units: 5.
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