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Bilkent University

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Undergraduate and Graduate Programs 2020-2021

MSN 530 Biomolecular Modeling and Simulation

Introduction to biomolecular systems, Stochastic principles of biomolecular systems, Thermodynamic principles, equilibrium, energy, and order in biomolecular systems, Free energy of molecular systems and Boltzmann distribution, Thermodynamic biomolecular forces, Basics of molecular dynamics simulation, Introduction to Monte Carlo simulation, Intermolecular forces and integration schemes, Measurement of transport properties and different ensembles, Simulating flexible molecules and surfactants, Dissipative particle dynamics and Brownian dynamics simulation, Simulation softwares of biomolecules. Credit units: 3 ECTS Credit units: 5.

Autumn Semester (Amirhoushang Bahrami)

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